Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1630

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1629: 9997 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 754772 to 756288 9997 mRNA_1630: 9998 - SUPERFAMILY--SSF81383, at 756759 to 757602 9998 mRNA_1631: 9999 - BLAST Tyrosine-protein phosphatase non-receptor type 23 [St..., at 757960 to 758498 9999

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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755,852 - 9997 mRNA_1629 0.71 -1.7
755,863 + 9997 mRNA_1629 0.72 -2.4
756,390 + -1.8
756,568 - 0.0
756,573 + 0.9
756,985 - 9998 mRNA_1630 0.27 0.0
757,006 - 9998 mRNA_1630 0.29 0.6
757,018 - 9998 mRNA_1630 0.31 2.2
757,266 + 9998 mRNA_1630 0.60 2.1
757,447 + 9998 mRNA_1630 0.82 -0.8
757,583 + -1.3
757,588 + 0.4
757,721 + 0.5
757,732 + 0.1
757,740 - 0.3
757,741 + -0.7
757,773 + 1.1
757,803 - 1.5
757,811 - 2.3
757,856 + -0.8
757,858 - 0.6
757,865 - 1.2
757,867 + -0.8
757,872 + 3.0
757,880 - -0.3
757,886 + 0.8
757,921 + 2.4
757,993 + -0.9
758,198 + 9999 mRNA_1631 0.44 0.4
758,206 + 9999 mRNA_1631 0.46 -1.0
758,530 + 0.6
758,574 + 0.1