Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1608

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706172 to 709618 9975 mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709938 to 711637 9976

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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709,019 + 9975 mRNA_1607 0.83 1.9
709,049 + 9975 mRNA_1607 0.83 0.2
709,085 - 9975 mRNA_1607 0.85 3.1
709,149 + 9975 mRNA_1607 0.86 1.8
709,206 - 9975 mRNA_1607 0.88 -0.2
709,291 - 1.5
709,324 + -0.9
709,332 + 2.1
709,450 + 1.5
709,501 - 1.3
709,617 + 2.3
709,624 - 1.2
709,633 + -0.5
709,671 - 0.5
709,687 - -1.2
709,696 + 0.6
709,724 + 0.6
709,813 + 1.1
709,926 + -1.8
709,949 + 0.6
710,068 + -0.0
710,082 + 0.3
710,161 - 9976 mRNA_1608 0.13 1.5
710,204 + 9976 mRNA_1608 0.16 0.3
710,206 + 9976 mRNA_1608 0.16 0.6
710,536 + 9976 mRNA_1608 0.35 0.4
711,090 + 9976 mRNA_1608 0.68 2.9
711,117 + 9976 mRNA_1608 0.69 2.7
711,407 - 9976 mRNA_1608 0.86 0.7
711,525 + 1.2
711,668 + 0.2
711,678 + 1.2
711,690 + 2.6
711,835 + 0.4
711,840 + 1.5
711,841 - 1.2
711,871 + 2.2
711,888 - -0.3
711,950 + 0.1
712,007 - 1.2
712,142 - 2.2