Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1600

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690460 to 691819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692318 to 693945 9968 mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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691,961 + 0.6
692,058 - -0.3
692,091 + 0.2
692,110 + 0.5
692,250 + -0.5
692,383 + 0.4
692,390 + -0.9
692,787 - 9968 mRNA_1600 0.29 1.1
692,820 - 9968 mRNA_1600 0.31 3.3
693,541 + 9968 mRNA_1600 0.75 2.5
693,667 + 9968 mRNA_1600 0.83 0.2
693,850 - 0.2
693,867 - 1.8
694,029 - -0.3
694,041 + -1.1
694,276 - 1.3
694,756 + 9969 mRNA_1601 0.27 0.5