Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1594

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1594: 9962 - K16261 YAT yeast amino acid transporter, at 681003 to 683049 9962 mRNA_1595: 9963 - K13342 PEX5, PXR1 peroxin-5, at 683358 to 685744 9963

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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680,012 - -0.3
680,013 + -0.2
680,015 + -2.4
680,026 + -0.6
680,033 - 1.4
680,033 - -1.6
680,038 + 0.3
680,041 + -0.5
680,045 - -1.7
680,048 - -0.1
680,052 + 0.1
680,064 + -0.0
680,126 + 0.3
680,136 - -0.1
680,136 - -0.3
680,137 + -0.8
680,137 - -0.3
680,147 + 0.1
680,208 - -0.2
680,245 - -1.5
680,280 - -0.6
680,297 - 1.5
680,308 - 1.6
680,310 - -0.9
680,310 - 2.1
680,317 - 0.7
680,321 + 2.1
680,327 + -0.3
680,357 - -0.2
680,369 + 1.6
680,377 + -1.2
680,395 + 1.8
680,405 - 0.3
680,423 - -0.4
680,454 + 1.4
680,460 + 0.9
680,486 - -1.0
680,493 - -0.1
680,529 + 0.5
680,915 - -0.3
680,921 + 0.5
680,987 + 0.0
681,078 - -0.5
681,208 + 9962 mRNA_1594 0.10 2.7
681,222 + 9962 mRNA_1594 0.11 -2.7
681,534 - 9962 mRNA_1594 0.26 0.4
681,914 + 9962 mRNA_1594 0.45 0.7
681,942 + 9962 mRNA_1594 0.46 0.2
681,955 + 9962 mRNA_1594 0.47 1.5
682,073 + 9962 mRNA_1594 0.52 1.0
682,250 - 9962 mRNA_1594 0.61 -1.3
682,407 - 9962 mRNA_1594 0.69 1.2
682,409 + 9962 mRNA_1594 0.69 0.4
682,507 + 9962 mRNA_1594 0.73 0.6
682,560 - 9962 mRNA_1594 0.76 2.2
682,689 - 9962 mRNA_1594 0.82 0.6
682,838 - 9962 mRNA_1594 0.90 -0.0
682,839 - 9962 mRNA_1594 0.90 1.6
682,861 + 0.5
682,877 + 0.8
682,881 + 1.8
682,979 + 2.7
683,015 + 0.6
683,122 - -0.9
683,122 - -0.6
683,251 + -0.3
683,542 - -0.5