Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1580

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1579: 9947 - Hypothetical Protein, at 648385 to 649747 9947 mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650033 to 651263 9948 mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651787 to 652843 9949

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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649,191 - 9947 mRNA_1579 0.59 1.0
649,338 - 9947 mRNA_1579 0.70 0.5
649,357 - 9947 mRNA_1579 0.71 -0.5
649,506 + 9947 mRNA_1579 0.82 1.3
649,511 - 9947 mRNA_1579 0.83 -0.1
649,638 - 0.9
649,646 + -0.1
649,658 - -1.6
649,768 - -1.2
649,778 + 0.3
649,805 - 0.0
649,810 - 1.5
649,810 - 0.4
649,932 + 1.5
649,960 - -0.3
649,966 - 1.2
649,967 + -0.8
649,968 - 2.8
649,969 + 0.4
649,972 - 0.9
649,975 - 0.4
650,000 + 1.6
650,010 + -1.0
650,273 - 9948 mRNA_1580 0.19 1.4
650,298 - 9948 mRNA_1580 0.22 -0.1
650,303 + 9948 mRNA_1580 0.22 3.6
650,423 + 9948 mRNA_1580 0.32 0.2
650,574 - 9948 mRNA_1580 0.44 -2.3
650,584 - 9948 mRNA_1580 0.45 0.8
650,683 + 9948 mRNA_1580 0.53 1.6
650,865 + 9948 mRNA_1580 0.68 -0.0
651,318 - -1.1
651,450 - 0.4
651,564 - 1.2
651,597 + -0.0
651,609 - 0.0
651,609 + -1.0
651,629 - 0.6
651,638 - -0.4
651,640 + -0.3
651,645 - 0.8
651,648 - 1.5
651,653 + -1.6
651,659 + -0.3
651,671 - -1.4
651,677 + -0.5
651,678 - 2.9
651,680 + 0.6
651,844 - 1.0
651,851 + 0.4
651,960 + 9949 mRNA_1581 0.16 -0.1
651,969 + 9949 mRNA_1581 0.17 -0.7
652,144 - 9949 mRNA_1581 0.34 0.6