Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1578

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637857 to 639925 9945 mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640262 to 646467 9946

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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640,037 + 1.7
640,043 - 1.0
640,045 + -0.0
640,045 + -0.4
640,051 + -0.9
640,051 - 1.9
640,056 + 0.4
640,057 + 3.4
640,059 + 0.5
640,061 + -1.2
640,062 - 0.3
640,153 - -0.5
640,191 - 0.6
640,335 - 0.3
640,338 + 0.5
640,557 - 0.1
640,784 - 0.4
640,802 - -1.5
640,802 - 1.0
640,909 + 9946 mRNA_1578 0.10 1.2
640,909 + 9946 mRNA_1578 0.10 0.4
640,910 - 9946 mRNA_1578 0.10 1.1
640,912 - 9946 mRNA_1578 0.10 -1.2
640,913 - 9946 mRNA_1578 0.10 0.9
640,914 + 9946 mRNA_1578 0.11 1.4
640,914 + 9946 mRNA_1578 0.11 -0.7
640,977 + 9946 mRNA_1578 0.12 1.8
641,022 + 9946 mRNA_1578 0.12 0.8
641,055 - 9946 mRNA_1578 0.13 0.5
641,060 + 9946 mRNA_1578 0.13 1.5
641,717 - 9946 mRNA_1578 0.23 -1.2
641,816 - 9946 mRNA_1578 0.25 -0.2
641,971 + 9946 mRNA_1578 0.28 1.4
642,146 + 9946 mRNA_1578 0.30 1.4
642,472 - 9946 mRNA_1578 0.36 1.9
642,529 - 9946 mRNA_1578 0.37 2.1
642,585 + 9946 mRNA_1578 0.37 0.2
642,854 - 9946 mRNA_1578 0.42 1.0
642,872 - 9946 mRNA_1578 0.42 1.6
643,584 + 9946 mRNA_1578 0.54 1.8
643,720 + 9946 mRNA_1578 0.56 -1.2
643,991 - 9946 mRNA_1578 0.60 2.5
644,194 - 9946 mRNA_1578 0.63 -0.9
644,288 + 9946 mRNA_1578 0.65 -0.5
644,312 - 9946 mRNA_1578 0.65 -0.7
644,352 - 9946 mRNA_1578 0.66 -2.4
644,652 - 9946 mRNA_1578 0.71 0.0
644,770 - 9946 mRNA_1578 0.73 0.4
644,784 - 9946 mRNA_1578 0.73 0.3
644,785 + 9946 mRNA_1578 0.73 0.3
644,786 - 9946 mRNA_1578 0.73 -0.4
644,950 - 9946 mRNA_1578 0.76 -0.1
644,979 + 9946 mRNA_1578 0.76 -1.7
645,017 - 9946 mRNA_1578 0.77 3.2
645,068 + 9946 mRNA_1578 0.77 0.9
645,124 - 9946 mRNA_1578 0.78 -0.8
645,354 - 9946 mRNA_1578 0.82 -0.7
645,475 - 9946 mRNA_1578 0.84 -0.9
645,616 + 9946 mRNA_1578 0.86 -0.5
645,732 - 9946 mRNA_1578 0.88 -0.3
645,980 + -0.3
645,999 - -0.1
646,188 + -0.3
646,275 + -0.6
646,278 - 2.0
646,319 + 0.3
646,459 + -2.4
646,466 + -1.5
646,707 - -0.3
647,038 - 2.7
647,073 + -0.1
647,141 + -0.7
647,328 - -1.3
647,344 + -0.7