Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1574

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1573: 9941 - KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily), at 625284 to 628967 9941 mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629129 to 634398 9942 mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634965 to 635420 9943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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628,710 - -0.2
629,028 + 0.6
630,468 - 9942 mRNA_1574 0.25 1.1
630,721 + 9942 mRNA_1574 0.30 0.3
631,477 + 9942 mRNA_1574 0.45 2.2
631,674 - 9942 mRNA_1574 0.48 0.9
634,446 + 0.2
634,455 + 0.4
634,456 + 1.4
634,554 - 0.3
634,573 - 0.5
634,576 - -0.0
634,580 - 1.6
634,592 - -0.7
634,639 - 0.6
634,693 - -0.0
634,716 - 1.0
634,720 - 0.8
634,723 - -0.6
634,723 + -0.1
634,725 - -0.6
634,735 - 0.7
634,744 - -1.8
634,798 + 0.4
634,802 - 0.4
634,804 - 3.7
634,820 + 2.3
634,846 - 0.1
634,900 - -0.4
635,054 + 9943 mRNA_1575 0.20 1.0
635,074 - 9943 mRNA_1575 0.24 1.7
635,166 + 9943 mRNA_1575 0.44 0.1
635,194 + 9943 mRNA_1575 0.50 -0.9
635,201 + 9943 mRNA_1575 0.52 0.8
635,210 - 9943 mRNA_1575 0.54 -0.8
635,366 + 9943 mRNA_1575 0.88 0.1
635,371 + 9943 mRNA_1575 0.89 -0.4
635,375 - -0.3