Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1567

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1566: 9934 - Hypothetical Protein, at 610347 to 612663 9934 mRNA_1567: 9935 - KOG4129 Exopolyphosphatases and related proteins, at 612854 to 615039 9935 mRNA_1568: 9936 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 615434 to 616155 9936

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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612,380 + 9934 mRNA_1566 0.88 0.4
612,560 + -1.1
612,707 + -1.3
612,753 - -0.5
613,277 - 9935 mRNA_1567 0.19 -0.5
613,301 - 9935 mRNA_1567 0.20 -1.2
613,767 - 9935 mRNA_1567 0.42 0.3
614,044 - 9935 mRNA_1567 0.54 1.6
614,204 - 9935 mRNA_1567 0.62 0.2
614,452 - 9935 mRNA_1567 0.73 -1.2
614,477 - 9935 mRNA_1567 0.74 -0.1
614,518 - 9935 mRNA_1567 0.76 0.5
614,619 - 9935 mRNA_1567 0.81 0.4
614,756 + 9935 mRNA_1567 0.87 1.4
614,757 - 9935 mRNA_1567 0.87 1.5
615,048 - -0.0
615,068 + 0.4
615,071 - 2.8
615,093 - 0.3
615,355 - 1.6
615,387 - 1.7
615,390 + -0.4
615,932 - 9936 mRNA_1568 0.69 0.3