Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1557

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1556: 9924 - KOG3114 Uncharacterized conserved protein, at 587080 to 588305 9924 mRNA_1557: 9925 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 588478 to 590403 9925 mRNA_1558: 9926 - KOG4155 FOG WD40 repeat, at 590667 to 593724 9926

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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587,619 + 9924 mRNA_1556 0.44 2.1
587,660 - 9924 mRNA_1556 0.47 -0.5
587,794 - 9924 mRNA_1556 0.58 0.3
588,088 - 9924 mRNA_1556 0.82 -0.0
588,557 + -0.6
588,845 + 9925 mRNA_1557 0.19 0.8
589,243 - 9925 mRNA_1557 0.40 1.1
589,262 + 9925 mRNA_1557 0.41 0.4
589,268 + 9925 mRNA_1557 0.41 0.2
589,615 - 9925 mRNA_1557 0.59 1.3
589,731 - 9925 mRNA_1557 0.65 0.8
589,929 - 9925 mRNA_1557 0.75 1.1
589,988 + 9925 mRNA_1557 0.78 -0.7
590,567 - -0.1
590,568 + 0.6
590,589 + 1.5
590,599 - 2.5