Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1552

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1551: 9919 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 571932 to 573047 9919 mRNA_1552: 9920 - K03115 CSNK2B casein kinase II subunit beta, at 573433 to 575580 9920 mRNA_1553: 9921 - KOG1729 FYVE finger containing protein, at 575685 to 583746 9921

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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572,547 + 9919 mRNA_1551 0.55 0.6
572,564 - 9919 mRNA_1551 0.57 -0.0
572,685 + 9919 mRNA_1551 0.67 0.4
572,882 - 9919 mRNA_1551 0.85 -0.1
572,899 + 9919 mRNA_1551 0.87 -0.6
573,586 + -0.9
573,648 + 9920 mRNA_1552 0.10 -0.4
573,680 - 9920 mRNA_1552 0.11 -0.1
573,988 - 9920 mRNA_1552 0.26 -0.4
575,474 - 0.3
575,486 - 1.6
575,497 + -1.9
575,615 + 3.8
575,628 + 0.8
575,630 - 0.4
575,630 + 0.2
575,651 - 0.3
575,768 - 0.7
575,778 + 0.1
575,781 + -1.1
575,785 - 0.9
575,787 + 1.7
575,958 + 0.7
576,079 - 0.7
576,243 + 1.7
576,501 - 9921 mRNA_1553 0.10 -0.5