Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1550

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1549: 9917 - BLAST putative TspO/MBR family containing protein [Rhizocto..., at 568669 to 569316 9917 mRNA_1550: 9918 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 569375 to 570862 9918

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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568,444 - 1.0
568,450 - 2.5
568,461 + -0.4
568,583 + -0.4
568,864 - 9917 mRNA_1549 0.30 -0.2
568,905 + 9917 mRNA_1549 0.36 -0.3
568,919 - 9917 mRNA_1549 0.39 -1.5
569,026 - 9917 mRNA_1549 0.55 -0.1
569,044 + 9917 mRNA_1549 0.58 -0.5
569,189 + 9917 mRNA_1549 0.80 0.6
569,311 + -0.2
569,342 + 1.3
569,465 - -0.3
569,468 + -1.3
569,875 - 9918 mRNA_1550 0.34 3.9
570,473 - 9918 mRNA_1550 0.74 0.0
570,499 - 9918 mRNA_1550 0.76 0.5
570,500 + 9918 mRNA_1550 0.76 0.5
570,614 - 9918 mRNA_1550 0.83 0.4
570,636 + 9918 mRNA_1550 0.85 -0.1
570,644 + 9918 mRNA_1550 0.85 -1.3
570,915 + 3.4
570,946 + 0.8
571,044 - -1.0
571,191 - -0.5
571,212 + -1.1
571,239 + -0.8
571,343 - 1.8
571,468 + 1.9
571,491 - 1.5
571,510 - 0.1
571,516 + 1.8
571,525 - 0.1
571,536 + -1.2
571,561 - 0.4
571,591 + -0.9
571,619 - 1.0
571,643 - 0.2
571,646 - 2.0
571,655 + -0.9
571,674 + 2.0
571,676 + 0.5
571,711 + 0.6
571,809 - 0.2
571,816 - 2.3
571,818 - -2.2