Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1547

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559318 to 562481 9914 mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562585 to 566021 9915 mRNA_1548: 9916 - K07937 ARF1 ADP-ribosylation factor 1, at 566553 to 567814 9916

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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562,082 - 9914 mRNA_1546 0.87 2.1
562,104 - 9914 mRNA_1546 0.88 0.1
562,407 - -0.4
562,518 + 0.4
565,556 - 9915 mRNA_1547 0.86 0.9
566,499 + 1.2
566,504 + -1.7
566,507 + 0.5