Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1518

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494782 to 496298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496923 to 498027 9886 mRNA_1519: 9887 - K03434 PIGL N-acetylglucosaminylphosphatidylinositol deacetylase, at 498486 to 499593 9887

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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496,039 - 9885 mRNA_1517 0.83 0.2
496,039 - 9885 mRNA_1517 0.83 1.3
496,317 + 0.0
496,346 - 1.0
496,400 - -0.9
496,466 + -0.4
496,476 + 0.9
496,488 + 0.1
496,556 + -1.1
496,578 - 0.9
496,595 + -0.4
496,596 + -1.0
496,606 + 0.3
496,613 + 0.2
496,652 - -1.0
496,690 + 0.8
496,691 + 0.0
496,696 + -0.8
496,696 + -1.3
496,699 - 0.2
496,716 - -1.4
496,753 - -0.2
496,772 - -1.1
496,772 - 0.7
496,772 - 0.1
496,782 + -0.6
496,785 - 1.2
496,787 + -0.1
496,789 + -0.2
496,795 + 0.2
496,799 + 0.6
496,799 + -0.3
496,806 + -1.3
496,823 + 0.7
496,909 + -0.4
497,184 + 9886 mRNA_1518 0.24 -0.0
498,174 - 2.9
498,175 - -1.2
498,180 - -0.4
498,181 - 1.8
498,320 + 0.3
498,322 - -0.6
498,334 - -0.2
498,338 - -0.3
498,339 - 1.3
498,340 + 0.9
498,343 + -0.1
498,658 + 9887 mRNA_1519 0.16 0.4
498,737 - 9887 mRNA_1519 0.23 -0.0
498,737 - 9887 mRNA_1519 0.23 0.0