Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1517

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884 mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494782 to 496298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496923 to 498027 9886

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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493,826 - 0.7
493,853 + 0.2
493,863 + -0.6
493,867 + 0.6
493,908 - 0.5
493,923 - -1.1
493,926 + -1.2
493,939 - 0.1
493,943 - 1.5
493,951 - 0.3
493,977 - -2.6
494,022 + 2.0
494,025 + -0.6
494,033 + -1.8
494,033 - 1.2
494,037 + -0.6
494,039 - 1.1
494,054 - 0.7
494,060 + 1.0
494,112 - -0.2
494,114 - -0.0
494,115 + -0.5
494,120 - 0.3
494,124 + 1.9
494,127 + 0.1
494,131 + 1.5
494,132 - 1.1
494,163 - 2.0
494,169 + 0.3
494,184 + -0.8
494,195 - -0.3
494,204 + -0.4
494,204 - -1.9
494,214 + -0.3
494,214 - -1.9
494,219 + 1.9
494,219 + -1.6
494,229 + 0.3
494,240 + -1.5
494,240 + 0.1
494,241 + 0.1
494,261 + -0.0
494,271 - -0.4
494,271 - 1.6
494,277 + 0.7
494,286 - -0.1
494,287 - -1.2
494,289 - -0.4
494,291 + 1.7
494,292 + 0.1
494,311 - 0.9
494,311 - 1.1
494,318 + -0.9
494,318 + 0.1
494,321 + 1.4
494,321 + -0.1
494,323 - 1.2
494,325 - -2.5
494,326 - -0.4
494,330 - 0.1
494,330 + -0.3
494,332 + 0.9
494,335 + 0.1
494,343 + -1.0
494,390 + 0.7
494,431 + 2.5
494,450 + 2.3
494,473 + 0.8
494,475 + 0.0
494,530 + -1.0
494,572 + -0.0
494,583 + 1.0
494,594 + -0.0
494,625 - -0.0
494,626 + 1.7
494,654 - 0.1
494,658 + -0.9
494,687 - 0.8
494,740 - -0.9
494,791 + 0.1
494,823 + 1.0
494,880 + 0.0
494,901 - 3.1
494,919 - 0.2
494,967 + 9885 mRNA_1517 0.12 2.8
494,981 - 9885 mRNA_1517 0.13 -1.2
495,002 + 9885 mRNA_1517 0.15 -0.6
495,006 + 9885 mRNA_1517 0.15 0.8
495,054 - 9885 mRNA_1517 0.18 2.0
495,125 + 9885 mRNA_1517 0.23 2.6
495,151 - 9885 mRNA_1517 0.24 0.8
495,156 + 9885 mRNA_1517 0.25 0.6
495,216 - 9885 mRNA_1517 0.29 -0.5
495,216 - 9885 mRNA_1517 0.29 1.8
495,356 - 9885 mRNA_1517 0.38 1.0
495,470 + 9885 mRNA_1517 0.45 0.4
495,479 + 9885 mRNA_1517 0.46 1.0
496,039 - 9885 mRNA_1517 0.83 0.2
496,039 - 9885 mRNA_1517 0.83 1.3
496,317 + 0.0
496,346 - 1.0
496,400 - -0.9
496,466 + -0.4
496,476 + 0.9
496,488 + 0.1
496,556 + -1.1
496,578 - 0.9
496,595 + -0.4
496,596 + -1.0
496,606 + 0.3
496,613 + 0.2
496,652 - -1.0
496,690 + 0.8
496,691 + 0.0
496,696 + -0.8
496,696 + -1.3
496,699 - 0.2
496,716 - -1.4
496,753 - -0.2
496,772 - -1.1
496,772 - 0.7
496,772 - 0.1
496,782 + -0.6
496,785 - 1.2
496,787 + -0.1
496,789 + -0.2
496,795 + 0.2
496,799 + 0.6
496,799 + -0.3
496,806 + -1.3
496,823 + 0.7
496,909 + -0.4
497,184 + 9886 mRNA_1518 0.24 -0.0