Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1509

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1508: 9876 - KOG3140 Predicted membrane protein, at 471301 to 473619 9876 mRNA_1509: 9877 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 474155 to 475425 9877 mRNA_1510: 9878 - KOG2695 WD40 repeat protein, at 476183 to 478334 9878

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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473,517 + 2.1
473,518 - 2.7
473,518 + 2.5
473,520 + 0.5
473,523 - 0.5
473,545 - -2.7
473,564 + -1.3
473,696 - -1.1
473,801 - -0.1
473,810 + 3.3
473,824 - 0.3
473,829 - -0.2
473,835 + -0.3
473,846 + -0.0
473,848 + 1.9
473,856 - 0.7
473,858 - -1.2
473,862 + -0.6
473,867 + -0.3
473,997 + 0.3
473,998 - -1.6
473,999 + 1.2
474,004 - 1.8
474,017 + 0.0
474,033 + 2.5
474,131 + 0.4
474,181 + -0.3
474,269 - 1.3
474,305 - 9877 mRNA_1509 0.12 -0.1
474,320 + 9877 mRNA_1509 0.13 -1.1
474,574 + 9877 mRNA_1509 0.33 0.0
474,594 + 9877 mRNA_1509 0.35 0.7
474,740 + 9877 mRNA_1509 0.46 2.4
475,479 + -0.1
475,910 + -0.6
475,916 + -2.6
476,024 - -1.0
476,078 - 0.1
476,086 + -0.4
476,179 + -1.9