Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1503

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460348 to 464473 9870 mRNA_1503: 9871 - Hypothetical Protein, at 464833 to 466128 9871 mRNA_1504: 9872 - K11251 H2A histone H2A, at 466293 to 467391 9872

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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463,974 + 9870 mRNA_1502 0.88 -1.1
463,993 + 9870 mRNA_1502 0.88 2.5
464,261 - 1.1
464,337 - 3.0
464,370 - 0.5
464,440 - 2.6
464,445 + 1.2
464,543 - 1.2
464,746 + 1.0
464,984 + 9871 mRNA_1503 0.12 0.8
465,020 - 9871 mRNA_1503 0.14 0.4
465,415 - 9871 mRNA_1503 0.45 0.9
465,461 + 9871 mRNA_1503 0.48 2.1
465,845 + 9871 mRNA_1503 0.78 1.8
465,903 + 9871 mRNA_1503 0.83 0.6
466,036 - -0.8
466,057 - -0.4
466,190 + 0.3
466,193 - 1.9
466,194 - -0.8
466,209 - -0.2
466,218 - 2.5
466,224 + 0.9
466,244 - -1.8
466,250 + 1.1
466,254 + -2.3