Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1502

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1501: 9869 - Hypothetical Protein, at 459271 to 459744 9869 mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460348 to 464473 9870 mRNA_1503: 9871 - Hypothetical Protein, at 464833 to 466128 9871

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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459,351 + 9869 mRNA_1501 0.17 -0.4
459,360 + 9869 mRNA_1501 0.19 2.7
459,360 + 9869 mRNA_1501 0.19 -0.3
459,461 - 9869 mRNA_1501 0.40 1.2
459,468 - 9869 mRNA_1501 0.42 0.1
459,471 - 9869 mRNA_1501 0.42 -2.3
459,478 + 9869 mRNA_1501 0.44 -0.1
459,482 - 9869 mRNA_1501 0.45 -0.5
459,482 - 9869 mRNA_1501 0.45 1.2
459,485 + 9869 mRNA_1501 0.45 0.1
459,487 - 9869 mRNA_1501 0.46 -0.1
459,488 - 9869 mRNA_1501 0.46 1.6
459,488 + 9869 mRNA_1501 0.46 0.7
459,488 + 9869 mRNA_1501 0.46 0.9
459,492 - 9869 mRNA_1501 0.47 0.4
459,504 + 9869 mRNA_1501 0.49 -0.4
459,532 + 9869 mRNA_1501 0.55 1.5
459,633 - 9869 mRNA_1501 0.76 -0.4
459,639 - 9869 mRNA_1501 0.78 -0.1
459,752 - -0.2
459,771 + 2.2
459,771 - -0.9
459,797 - -0.0
459,797 - 1.2
459,812 + 0.0
459,815 + 1.5
459,839 - -0.0
459,891 + 0.5
459,959 - -1.0
459,962 + 0.2
460,067 + 2.3
460,114 + 2.8
460,127 - -1.7
460,165 - 0.5
460,213 + 0.9
460,244 + -0.2
460,371 + -1.5
460,834 - 9870 mRNA_1502 0.12 -0.7
460,885 + 9870 mRNA_1502 0.13 0.9
461,161 - 9870 mRNA_1502 0.20 1.1
461,179 + 9870 mRNA_1502 0.20 -0.6
461,197 - 9870 mRNA_1502 0.21 -0.4
461,289 + 9870 mRNA_1502 0.23 -0.2
461,608 - 9870 mRNA_1502 0.31 0.6
461,611 + 9870 mRNA_1502 0.31 0.7
461,632 + 9870 mRNA_1502 0.31 1.6
461,738 - 9870 mRNA_1502 0.34 -2.1
462,027 - 9870 mRNA_1502 0.41 1.2
462,150 + 9870 mRNA_1502 0.44 0.4
462,352 - 9870 mRNA_1502 0.49 1.2
462,481 + 9870 mRNA_1502 0.52 1.8
462,499 + 9870 mRNA_1502 0.52 -0.6
462,527 + 9870 mRNA_1502 0.53 0.5
462,647 - 9870 mRNA_1502 0.56 -0.4
462,648 + 9870 mRNA_1502 0.56 0.1
463,096 + 9870 mRNA_1502 0.67 0.1
463,099 - 9870 mRNA_1502 0.67 -1.3
463,385 + 9870 mRNA_1502 0.74 -0.3
463,408 + 9870 mRNA_1502 0.74 -0.0
463,424 - 9870 mRNA_1502 0.75 0.1
463,703 - 9870 mRNA_1502 0.81 0.0
463,974 + 9870 mRNA_1502 0.88 -1.1
463,993 + 9870 mRNA_1502 0.88 2.5
464,261 - 1.1
464,337 - 3.0
464,370 - 0.5
464,440 - 2.6
464,445 + 1.2
464,543 - 1.2
464,746 + 1.0
464,984 + 9871 mRNA_1503 0.12 0.8
465,020 - 9871 mRNA_1503 0.14 0.4
465,415 - 9871 mRNA_1503 0.45 0.9
465,461 + 9871 mRNA_1503 0.48 2.1