Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1501

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868 mRNA_1501: 9869 - Hypothetical Protein, at 459271 to 459744 9869 mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460348 to 464473 9870

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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458,319 + 0.1
458,335 - 1.4
458,775 - 9868 mRNA_1500 0.66 1.1
459,070 - 0.3
459,183 + -1.1
459,198 - 0.1
459,205 - -1.1
459,209 + 1.6
459,216 - -2.2
459,225 + 0.0
459,243 - 1.7
459,243 - -1.0
459,244 - 0.1
459,245 - -2.4
459,256 - 1.7
459,257 + -0.0
459,270 - -0.0
459,313 - -0.1
459,326 + 9869 mRNA_1501 0.12 -0.2
459,329 + 9869 mRNA_1501 0.12 -0.0
459,339 - 9869 mRNA_1501 0.14 0.7
459,342 + 9869 mRNA_1501 0.15 0.3
459,351 + 9869 mRNA_1501 0.17 -0.4
459,360 + 9869 mRNA_1501 0.19 2.7
459,360 + 9869 mRNA_1501 0.19 -0.3
459,461 - 9869 mRNA_1501 0.40 1.2
459,468 - 9869 mRNA_1501 0.42 0.1
459,471 - 9869 mRNA_1501 0.42 -2.3
459,478 + 9869 mRNA_1501 0.44 -0.1
459,482 - 9869 mRNA_1501 0.45 -0.5
459,482 - 9869 mRNA_1501 0.45 1.2
459,485 + 9869 mRNA_1501 0.45 0.1
459,487 - 9869 mRNA_1501 0.46 -0.1
459,488 - 9869 mRNA_1501 0.46 1.6
459,488 + 9869 mRNA_1501 0.46 0.7
459,488 + 9869 mRNA_1501 0.46 0.9
459,492 - 9869 mRNA_1501 0.47 0.4
459,504 + 9869 mRNA_1501 0.49 -0.4
459,532 + 9869 mRNA_1501 0.55 1.5
459,633 - 9869 mRNA_1501 0.76 -0.4
459,639 - 9869 mRNA_1501 0.78 -0.1
459,752 - -0.2
459,771 + 2.2
459,771 - -0.9
459,797 - -0.0
459,797 - 1.2
459,812 + 0.0
459,815 + 1.5
459,839 - -0.0
459,891 + 0.5
459,959 - -1.0
459,962 + 0.2
460,067 + 2.3
460,114 + 2.8
460,127 - -1.7
460,165 - 0.5
460,213 + 0.9
460,244 + -0.2
460,371 + -1.5