Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1499

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455664 to 457570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458270 to 459039 9868

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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455,264 - 1.6
455,357 - -2.6
455,401 - 0.7
455,402 - -0.2
455,405 + 0.2
455,411 - -0.1
455,414 - 1.6
455,415 - 0.9
455,420 + -0.1
455,420 + 1.3
455,424 + 1.0
455,427 - 1.6
455,429 - 0.8
455,442 + -1.2
455,447 - 0.3
455,475 - -0.5
455,509 + -0.9
455,528 - -0.2
455,532 + 1.2
455,556 - -0.3
455,559 - -0.1
455,565 - -0.1
455,574 - -0.3
455,578 - -0.4
455,578 + -0.2
455,578 - 0.8
455,633 - 0.4
455,707 - 2.1
455,709 + -0.3
455,866 - 9867 mRNA_1499 0.11 1.0
455,872 - 9867 mRNA_1499 0.11 0.8
455,874 + 9867 mRNA_1499 0.11 0.7
455,893 + 9867 mRNA_1499 0.12 1.4
455,927 - 9867 mRNA_1499 0.14 0.3
456,053 + 9867 mRNA_1499 0.20 1.6
456,131 - 9867 mRNA_1499 0.24 -0.4
456,347 + 9867 mRNA_1499 0.36 1.3
456,563 + 9867 mRNA_1499 0.47 1.4
456,629 + 9867 mRNA_1499 0.51 -0.0
456,732 + 9867 mRNA_1499 0.56 -0.3
456,888 + 9867 mRNA_1499 0.64 1.8
457,385 - -1.0
457,454 + -0.6
457,456 - -0.3
457,456 - -0.2
457,699 - 1.9
457,732 - -1.7
457,796 - -1.3
457,804 - 2.0
457,807 + 3.3
457,834 - 0.1
457,836 - -0.5
457,843 - 1.1
457,887 + 0.1
457,889 + 1.2
457,896 - 1.0
457,898 - -1.6
457,916 - 0.4
457,922 - 1.7
457,938 - 0.1
458,033 - -0.4
458,046 + 0.2
458,061 + -0.4
458,062 - 1.0
458,151 - -0.4
458,176 + 0.5
458,319 + 0.1
458,335 - 1.4