Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1493

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434341 to 437683 9860 mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437821 to 440939 9861

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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437,829 - 0.3
437,836 + -0.0
438,107 - 2.3
438,253 + 9861 mRNA_1493 0.14 3.0
438,265 + 9861 mRNA_1493 0.14 0.8
438,349 - 9861 mRNA_1493 0.17 1.6
438,527 - 9861 mRNA_1493 0.23 0.3
438,544 - 9861 mRNA_1493 0.23 -0.2
438,629 - 9861 mRNA_1493 0.26 3.1
439,559 - 9861 mRNA_1493 0.56 0.2
439,862 + 9861 mRNA_1493 0.65 0.2
440,023 - 9861 mRNA_1493 0.71 -1.0
440,170 + 9861 mRNA_1493 0.75 -0.1
440,396 - 9861 mRNA_1493 0.83 -0.8
440,556 - 9861 mRNA_1493 0.88 1.8
441,030 - 0.5
441,152 - 2.4
441,170 + -1.6
441,184 - 0.5
441,207 + 0.2
441,239 + -0.0
441,317 - -0.4
441,336 + 0.5
441,345 - -0.4
441,353 + 0.5
441,354 + -0.2
441,370 - 0.3
441,375 - -0.3
441,376 + 0.1
441,376 + -0.1
441,379 - 1.0
441,384 + 0.2
441,387 - 0.4
441,433 + -0.5
441,460 + -0.9
441,478 - 2.1
441,498 - -1.7
441,504 - 0.0
441,509 - 0.3
441,520 + -0.3
441,527 + 0.1
441,612 - -1.2
441,622 + -0.6
441,756 - 0.5
441,821 - -0.1
441,822 + -0.3
441,825 - -1.4
441,853 - 0.4