Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1490

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1489: 9857 - K09022 ridA, tdcF 2-iminobutanoate/2-iminopropanoate deaminase, at 428243 to 429095 9857 mRNA_1490: 9858 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 429512 to 431122 9858

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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428,793 + 9857 mRNA_1489 0.64 0.1
428,802 + 9857 mRNA_1489 0.66 0.3
429,226 + -0.2
429,364 - -0.8
429,381 + 1.1
429,389 - 1.9
429,389 + 1.8
429,393 - -0.9
429,413 + 0.9
429,513 - -1.6
429,567 - 1.5
429,809 + 9858 mRNA_1490 0.18 -2.5
429,962 - 9858 mRNA_1490 0.28 -0.3
429,995 - 9858 mRNA_1490 0.30 0.6
430,109 - 9858 mRNA_1490 0.37 1.9
430,578 + 9858 mRNA_1490 0.66 0.2
430,684 - 9858 mRNA_1490 0.73 0.2
430,685 + 9858 mRNA_1490 0.73 0.4
430,849 - 9858 mRNA_1490 0.83 -2.1
430,881 - 9858 mRNA_1490 0.85 -0.2
431,002 + -0.2
431,008 + 3.2
431,010 - 4.1
431,014 - 0.5
431,014 - 2.2
431,160 + 1.3
431,165 - 0.4
431,180 - 0.2
431,183 + 0.2
431,186 - -0.9
431,190 + 0.1
431,200 - 0.3
431,204 + -0.9
431,207 + 0.8
431,208 + -0.5
431,216 + 0.7
431,219 - 0.2
431,222 + -2.1
431,223 + 3.0
431,230 + -0.1
431,231 - -1.7
431,235 + -1.3
431,242 + -0.5
431,250 - 0.4
431,250 - -0.1
431,250 + -1.1
431,269 + -0.4
431,292 - 0.7
431,293 + -2.2
431,293 + 0.5
431,303 - 0.8
431,337 - -0.4
431,340 + -0.0
431,342 + -0.2
431,395 - -0.9
431,486 + 0.8
431,496 + -0.1
431,498 - 2.4
431,519 - -0.3
431,521 + 0.1
431,529 + 0.5
431,569 + 1.3
431,640 - -2.7
431,643 + -0.2
431,647 + 0.3
431,653 + 0.2
431,658 - 0.2
431,797 - -0.7
431,807 + 0.8
431,918 + -0.3
431,936 - -0.7
431,957 + 0.1
432,095 + 1.1