Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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413,277 - 9853 mRNA_1485 0.38 -0.4
413,446 - 9853 mRNA_1485 0.54 -2.1
413,574 - 9853 mRNA_1485 0.66 1.9
413,645 + 9853 mRNA_1485 0.73 0.1
413,710 + 9853 mRNA_1485 0.79 -0.0
413,843 - 0.6
413,907 + -0.5
414,189 - -1.6
414,190 + -1.4
414,242 + -0.9
414,471 + -1.6
414,871 - 9854 mRNA_1486 0.16 0.3
415,018 + 9854 mRNA_1486 0.19 1.0
415,042 + 9854 mRNA_1486 0.19 0.9
415,049 - 9854 mRNA_1486 0.19 -0.8
415,203 + 9854 mRNA_1486 0.22 0.6
415,322 - 9854 mRNA_1486 0.24 0.4
415,467 - 9854 mRNA_1486 0.27 1.2
415,496 - 9854 mRNA_1486 0.27 0.5
415,509 + 9854 mRNA_1486 0.28 -0.2
415,539 + 9854 mRNA_1486 0.28 2.4
415,545 - 9854 mRNA_1486 0.28 0.2
415,705 - 9854 mRNA_1486 0.31 -0.4
415,912 + 9854 mRNA_1486 0.35 0.3
415,938 - 9854 mRNA_1486 0.36 -1.2
415,943 - 9854 mRNA_1486 0.36 -0.2
416,025 - 9854 mRNA_1486 0.37 -0.7
416,067 + 9854 mRNA_1486 0.38 2.8
416,215 - 9854 mRNA_1486 0.41 0.0
416,392 + 9854 mRNA_1486 0.44 0.7
416,529 - 9854 mRNA_1486 0.47 0.1
416,530 + 9854 mRNA_1486 0.47 -0.2
416,690 + 9854 mRNA_1486 0.50 -0.9
416,730 - 9854 mRNA_1486 0.50 0.4
416,743 - 9854 mRNA_1486 0.51 -2.1
416,754 + 9854 mRNA_1486 0.51 0.0
417,131 + 9854 mRNA_1486 0.58 0.7
417,184 + 9854 mRNA_1486 0.59 0.1
417,268 + 9854 mRNA_1486 0.60 2.3
417,301 - 9854 mRNA_1486 0.61 -0.9
417,366 - 9854 mRNA_1486 0.62 -2.1
417,812 + 9854 mRNA_1486 0.70 -1.0
417,931 + 9854 mRNA_1486 0.73 0.7
417,984 + 9854 mRNA_1486 0.74 2.0
418,175 - 9854 mRNA_1486 0.77 1.6
418,283 - 9854 mRNA_1486 0.79 -2.4
418,345 + 9854 mRNA_1486 0.80 -0.3
418,634 - 9854 mRNA_1486 0.86 0.6
418,790 + 9854 mRNA_1486 0.88 -1.5
418,828 - 9854 mRNA_1486 0.89 0.2
419,060 + 0.1
419,064 - -0.4
419,129 - -0.4
419,222 + -1.2
419,388 - 1.0
419,393 + 0.2
419,479 - -0.7
419,488 + -0.2
419,532 - -0.8
419,537 - -0.1
419,545 + -0.3
419,682 - 0.1
419,702 + 0.4
419,785 + -0.6
419,840 + 0.4