Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1485

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410749 to 412587 9852 mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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412,115 + 9852 mRNA_1484 0.74 0.8
412,261 - 9852 mRNA_1484 0.82 0.5
412,269 - 9852 mRNA_1484 0.83 2.3
412,282 - 9852 mRNA_1484 0.83 0.4
412,314 + 9852 mRNA_1484 0.85 0.9
412,476 - 0.6
412,673 + 1.7
412,678 + -0.6
412,682 - 1.6
412,690 + 0.9
412,812 + 1.4
412,815 + -0.2
412,827 - -1.6
412,848 - -0.0
412,848 - 2.4
412,872 - 1.9
413,002 - 9853 mRNA_1485 0.12 2.2
413,006 - 9853 mRNA_1485 0.13 -0.7
413,277 - 9853 mRNA_1485 0.38 -0.4
413,446 - 9853 mRNA_1485 0.54 -2.1
413,574 - 9853 mRNA_1485 0.66 1.9
413,645 + 9853 mRNA_1485 0.73 0.1
413,710 + 9853 mRNA_1485 0.79 -0.0
413,843 - 0.6
413,907 + -0.5
414,189 - -1.6
414,190 + -1.4
414,242 + -0.9
414,471 + -1.6
414,871 - 9854 mRNA_1486 0.16 0.3