Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1472

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370707 to 382935 9839 mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383411 to 384622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385086 to 387836 9841

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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383,011 - -1.3
383,012 - -1.1
383,012 - -0.4
383,012 - -2.4
383,013 - -0.6
383,017 + -1.9
383,021 + 0.6
383,022 - 0.0
383,038 + -0.1
383,038 - 3.7
383,045 - 0.2
383,047 + -0.0
383,057 + 0.1
383,196 - -0.1
383,357 - 2.0
383,372 - 0.9
383,796 + 9840 mRNA_1472 0.32 0.7
383,945 + 9840 mRNA_1472 0.44 -0.3
384,529 + -0.2
384,548 + -0.0
384,653 + 0.4
384,694 + 0.1
384,713 + 0.2
384,724 + 1.3
384,777 + -2.1
384,792 - 0.8
384,814 + -0.8
384,914 + 1.6
384,930 + 1.3
384,931 + 1.4
384,938 + 1.6
384,938 + 0.7
384,968 + -0.2
384,974 - -0.9
384,985 + -1.5
384,988 - 1.1
384,991 - -0.2
384,992 + 2.9
384,996 - 1.1
385,005 - -1.1
385,062 + -1.1
385,063 - 1.0
385,070 - 1.1
385,096 - 0.6
385,098 - 2.9
385,099 + -0.5
385,119 - -0.1
385,119 - 0.1
385,119 + 0.5
385,122 + 1.9
385,131 - 1.0
385,133 + -2.2
385,134 - -0.2
385,153 + -0.5
385,219 - 0.1
385,220 - 0.2
385,261 - -1.5
385,268 + -0.6
385,271 - -0.8
385,304 + -0.5
385,398 - 9841 mRNA_1473 0.11 1.1
385,406 - 9841 mRNA_1473 0.12 1.0
385,423 - 9841 mRNA_1473 0.12 1.3