Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1470

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366449 to 367493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368201 to 370453 9838 mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370707 to 382935 9839

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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367,617 - -0.4
367,619 + 1.8
367,687 + -0.6
367,721 + 0.6
367,721 - -1.2
367,852 - -0.5
367,867 - -0.7
368,014 + -0.3
368,037 + -1.3
368,131 - 2.3
368,146 - 2.0
368,755 + 9838 mRNA_1470 0.25 0.5
369,024 - 9838 mRNA_1470 0.37 0.1
369,038 + 9838 mRNA_1470 0.37 -0.6
369,288 - 9838 mRNA_1470 0.48 0.4
369,499 - 9838 mRNA_1470 0.58 -1.0
369,658 + 9838 mRNA_1470 0.65 -2.7
369,666 - 9838 mRNA_1470 0.65 -0.2
370,035 - 9838 mRNA_1470 0.81 -1.0
370,684 - 0.5