Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1468

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360687 to 364959 9836

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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359,845 - 0.4
360,024 + 0.8
360,678 + 0.5
360,724 + 0.5
361,487 - 9836 mRNA_1468 0.19 1.5
362,116 + 9836 mRNA_1468 0.33 1.1
362,379 - 9836 mRNA_1468 0.40 0.1
363,476 - 9836 mRNA_1468 0.65 1.3
364,148 - 9836 mRNA_1468 0.81 0.7
364,157 - 9836 mRNA_1468 0.81 1.4
364,766 - -1.9
364,848 + -0.6
364,868 + 2.7
364,979 - -0.4
365,010 - 2.0
365,016 - 2.1
365,162 - -0.8
365,187 + 0.5
365,310 + -0.0
365,327 - 1.8
365,337 - 0.3
365,340 + -0.1
365,345 - 0.6
365,347 - 0.4
365,349 + 0.3
365,354 + 0.4
365,355 + 0.4
365,358 + -0.5
365,360 + 0.0
365,481 + 1.7
365,482 - -2.0
365,482 + -0.6
365,483 + 0.5
365,485 - 0.7
365,496 - 0.4
365,505 + -0.2
365,506 - -0.8
365,506 + 0.4
365,506 - 0.1
365,536 - -0.4
365,625 - 0.6
365,642 - -0.9
365,653 + 0.4
365,660 - 1.6
365,669 - -1.6
365,687 - 2.4