Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1460

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827 mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344701 to 345995 9828 mRNA_1461: 9829 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 346696 to 347592 9829

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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343,794 + 9827 mRNA_1459 0.73 -1.1
343,800 - 9827 mRNA_1459 0.74 1.9
343,812 + 9827 mRNA_1459 0.75 0.1
343,814 - 9827 mRNA_1459 0.75 -1.3
343,842 - 9827 mRNA_1459 0.77 -0.0
343,845 - 9827 mRNA_1459 0.77 -0.2
343,851 + 9827 mRNA_1459 0.78 0.1
343,851 + 9827 mRNA_1459 0.78 0.1
343,877 - 9827 mRNA_1459 0.80 -1.0
343,989 - 9827 mRNA_1459 0.89 0.3
344,112 - -0.3
344,140 + 0.0
344,148 + -2.2
344,285 + -0.1
344,288 + 0.1
344,296 - 0.3
344,302 + -2.5
344,411 - -1.3
344,430 - 0.6
344,717 - 0.4
344,747 - -0.2
344,865 - 9828 mRNA_1460 0.13 1.0
345,020 - 9828 mRNA_1460 0.25 0.0
345,172 + 9828 mRNA_1460 0.36 0.8
345,614 + 9828 mRNA_1460 0.71 0.3
345,883 + -1.4
345,887 - 0.3
345,887 - 0.5
346,045 + 1.3
346,183 - 1.1
346,184 - 1.3
346,320 - 0.9
346,483 + -0.6
346,504 - -0.4
346,922 + 9829 mRNA_1461 0.25 -0.9