Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1459

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1458: 9826 - K17775 MDM34, MMM2 mitochondrial distribution and morphology protein 34, at 339999 to 342727 9826 mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827 mRNA_1460: 9828 - K06911 K06911 uncharacterized protein, at 344701 to 345995 9828

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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341,939 - 9826 mRNA_1458 0.71 0.1
342,439 + 9826 mRNA_1458 0.89 0.3
343,440 + 9827 mRNA_1459 0.44 -1.0
343,440 - 9827 mRNA_1459 0.44 -0.2
343,674 + 9827 mRNA_1459 0.63 1.2
343,677 + 9827 mRNA_1459 0.64 1.7
343,699 - 9827 mRNA_1459 0.65 -0.2
343,794 + 9827 mRNA_1459 0.73 -1.1
343,800 - 9827 mRNA_1459 0.74 1.9
343,812 + 9827 mRNA_1459 0.75 0.1
343,814 - 9827 mRNA_1459 0.75 -1.3
343,842 - 9827 mRNA_1459 0.77 -0.0
343,845 - 9827 mRNA_1459 0.77 -0.2
343,851 + 9827 mRNA_1459 0.78 0.1
343,851 + 9827 mRNA_1459 0.78 0.1
343,877 - 9827 mRNA_1459 0.80 -1.0
343,989 - 9827 mRNA_1459 0.89 0.3
344,112 - -0.3
344,140 + 0.0
344,148 + -2.2
344,285 + -0.1
344,288 + 0.1
344,296 - 0.3
344,302 + -2.5
344,411 - -1.3
344,430 - 0.6
344,717 - 0.4
344,747 - -0.2
344,865 - 9828 mRNA_1460 0.13 1.0
345,020 - 9828 mRNA_1460 0.25 0.0