Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1442

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1441: 9809 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 285760 to 287814 9809 mRNA_1442: 9810 - K03549 kup KUP system potassium uptake protein, at 288246 to 290884 9810

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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287,300 + 9809 mRNA_1441 0.75 -0.0
287,409 - 9809 mRNA_1441 0.80 1.8
287,430 - 9809 mRNA_1441 0.81 0.2
287,738 + -1.0
287,739 + -0.2
287,803 + -1.3
287,852 - 0.8
287,882 + -0.6
287,893 - -0.2
287,915 - -1.2
288,355 + -1.4
288,455 - 1.1
288,470 - -0.2
288,730 + 9810 mRNA_1442 0.18 0.5
288,740 + 9810 mRNA_1442 0.19 0.3
288,752 - 9810 mRNA_1442 0.19 1.1
288,759 + 9810 mRNA_1442 0.19 0.5
289,035 + 9810 mRNA_1442 0.30 1.3
289,167 + 9810 mRNA_1442 0.35 -0.8
289,188 + 9810 mRNA_1442 0.36 1.7
289,484 + 9810 mRNA_1442 0.47 2.9
289,584 - 9810 mRNA_1442 0.51 2.0
289,737 + 9810 mRNA_1442 0.56 2.5
289,753 - 9810 mRNA_1442 0.57 -0.4
290,074 + 9810 mRNA_1442 0.69 0.0
290,465 - 9810 mRNA_1442 0.84 0.0
290,480 + 9810 mRNA_1442 0.85 0.5
290,485 - 9810 mRNA_1442 0.85 1.6
290,621 - -0.4
290,881 - -0.3
291,074 + 2.0
291,085 - 1.0
291,098 - 0.6
291,109 + -0.4
291,141 - -0.3
291,142 - -0.2
291,187 + 0.8
291,228 + -0.8
291,252 - 0.8
291,323 - 0.8
291,346 - 0.2
291,372 + 0.3
291,372 - 1.1
291,372 - -1.3
291,386 - 0.2
291,386 - 0.6
291,391 - 1.3
291,410 + 1.2
291,808 - -1.0
291,816 - 0.4