Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1430

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1429: 9797 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 262714 to 263546 9797 mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264327 to 265821 9798 mRNA_1431: 9799 - Hypothetical Protein, at 266080 to 266508 9799

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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263,572 - 1.1
263,624 - -0.1
264,708 + 9798 mRNA_1430 0.25 0.2
264,709 + 9798 mRNA_1430 0.26 -0.0
264,815 - 9798 mRNA_1430 0.33 0.2
264,825 - 9798 mRNA_1430 0.33 0.0
264,847 + 9798 mRNA_1430 0.35 -0.5
264,974 + 9798 mRNA_1430 0.43 0.1
265,000 + 9798 mRNA_1430 0.45 -0.4
265,406 - 9798 mRNA_1430 0.72 1.5
265,563 - 9798 mRNA_1430 0.83 1.2
265,684 - -1.1
265,722 - -0.3
265,847 - 1.4
265,876 + 1.7
265,889 - -0.4
265,890 - -0.9
265,894 + -1.6
265,914 + -1.3
266,018 - 0.3
266,036 - 0.0
266,188 + 9799 mRNA_1431 0.25 1.0
266,188 + 9799 mRNA_1431 0.25 0.9
266,339 - 9799 mRNA_1431 0.60 -1.0
266,463 - 9799 mRNA_1431 0.89 0.2
266,464 + 9799 mRNA_1431 0.90 -0.2
266,471 - 1.9
266,501 - -0.1
266,506 + -0.7
266,616 + -0.5
266,621 + -0.3
266,634 + -2.1
266,693 - -0.3
266,759 - 1.4
266,760 - -0.7