Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1422

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789 mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240937 to 244730 9790 mRNA_1423: 9791 - Hypothetical Protein, at 245191 to 249551 9791

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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239,956 + 9789 mRNA_1421 0.55 1.0
240,092 + 9789 mRNA_1421 0.71 -1.4
240,093 - 9789 mRNA_1421 0.71 0.5
240,669 - 1.9
240,814 - -0.3
240,820 - -0.1
240,821 - 2.8
240,823 - 0.4
240,823 + -0.2
240,823 - 2.1
240,826 + 0.4
240,830 + -0.1
240,832 + -0.5
240,834 + 1.5
240,835 + 0.8
240,846 + -0.9
240,852 - 1.4
240,853 - 1.9
240,853 + 0.6
240,853 - -1.1
240,854 + -0.2
240,857 + -0.3
240,858 - -0.0
240,863 + 0.0
240,865 + 1.3
240,870 + 1.2
240,875 - 0.1
240,876 + 0.3
240,878 - -0.1
240,887 + -2.0
240,971 - 0.5
241,007 + 0.5
241,143 + 0.4
241,167 + 0.1
241,631 + 9790 mRNA_1422 0.18 -1.0
241,764 + 9790 mRNA_1422 0.22 2.4
242,175 + 9790 mRNA_1422 0.33 -0.2
242,278 - 9790 mRNA_1422 0.35 -0.8
242,329 + 9790 mRNA_1422 0.37 -1.1
242,458 + 9790 mRNA_1422 0.40 1.8
242,945 + 9790 mRNA_1422 0.53 1.3
243,044 - 9790 mRNA_1422 0.56 1.9
243,209 + 9790 mRNA_1422 0.60 0.8
243,369 + 9790 mRNA_1422 0.64 0.7
244,080 - 9790 mRNA_1422 0.83 -0.1
244,102 - 9790 mRNA_1422 0.83 -1.8
244,174 - 9790 mRNA_1422 0.85 -0.5
244,266 - 9790 mRNA_1422 0.88 1.7
244,267 + 9790 mRNA_1422 0.88 0.1
244,413 + 1.7
244,529 - 1.2
244,607 + 0.4
244,712 - 1.8
244,717 + 1.9
244,842 + 1.3
244,848 - -0.1
244,901 - 0.0
244,957 - 1.6
244,993 - -0.4
245,004 - 0.7
245,011 + -0.0
245,154 - -0.2
245,496 + -0.3
245,685 - 9791 mRNA_1423 0.11 0.9