Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1420

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229918 to 235537 9787 mRNA_1420: 9788 - KOG4269 Rac GTPase-activating protein BCR/ABR, at 236131 to 238616 9788 mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239485 to 240342 9789

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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235,180 + 0.7
235,459 + 0.2
235,570 - 0.7
235,729 + 0.4
235,736 - -1.4
235,741 + -0.6
236,036 + 0.4
236,051 + 1.0
236,053 - 2.1
236,322 - 1.9
236,522 - 9788 mRNA_1420 0.16 -0.3
236,825 + 9788 mRNA_1420 0.28 0.6
236,942 + 9788 mRNA_1420 0.33 -0.3
237,319 + 9788 mRNA_1420 0.48 0.2
237,366 + 9788 mRNA_1420 0.50 -0.3
237,501 + 9788 mRNA_1420 0.55 1.3
237,504 - 9788 mRNA_1420 0.55 0.0
237,520 + 9788 mRNA_1420 0.56 0.3
237,768 - 9788 mRNA_1420 0.66 0.8
238,237 - 9788 mRNA_1420 0.85 1.8
238,332 + 9788 mRNA_1420 0.89 1.4
238,630 + 0.7
238,779 + -0.3
238,902 - 0.3
238,908 - -0.6
238,921 - 0.2
239,066 - -0.1
239,073 + 0.2
239,084 - -0.4
239,209 - -0.6
239,214 - -0.5
239,233 + 0.6
239,358 + -0.4
239,427 - 0.3
239,429 - -0.2
239,458 + 1.1
239,469 + -0.3
239,503 + 0.5
239,535 + 0.2