Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1417

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227247 to 228373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229007 to 229464 9786

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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226,307 - 1.0
226,754 - -0.1
226,894 + -0.4
226,908 + 0.1
227,006 - -0.0
227,058 + 2.8
227,350 - 1.4
227,813 - 9785 mRNA_1417 0.50 0.4
228,236 + 9785 mRNA_1417 0.88 2.3
228,244 + 9785 mRNA_1417 0.88 -0.0
228,390 + 1.0
228,529 + -0.1
228,535 + -0.2
228,559 + -0.7
228,832 - -0.7
228,961 - -0.5
228,987 - 0.3
229,106 + 9786 mRNA_1418 0.22 0.2
229,114 + 9786 mRNA_1418 0.23 0.2
229,246 + 9786 mRNA_1418 0.52 2.8