Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1416

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1416: 9784 - BLAST amino-acid permease [Pseudozyma hubeiensis SY62], at 224768 to 225675 9784

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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223,795 - -0.3
223,807 - -0.4
223,914 - 0.4
223,931 - -0.5
223,944 + 1.3
223,946 + 0.5
223,947 - 0.6
223,956 - 1.2
223,959 + 0.1
223,960 - -1.4
223,965 + 1.6
223,971 - 1.0
223,976 + 0.1
223,979 - -1.3
223,981 + 0.3
223,985 + 0.7
223,992 + 1.1
224,005 + 0.3
224,015 + 1.3
224,015 + -1.2
224,022 + -0.6
224,028 + 0.2
224,029 - 0.2
224,030 + 0.7
224,039 + -0.3
224,042 - 0.7
224,043 + 0.2
224,045 - -0.7
224,047 + 0.8
224,050 + 0.2
224,062 + 0.3
224,076 - 0.9
224,090 + -1.4
224,188 - -0.6
224,195 + -0.7
224,196 - 1.8
224,216 + 1.8
224,221 - 0.0
224,229 + -0.0
224,257 + -2.4
224,280 - -0.0
224,297 - 0.1
224,301 + 0.6
224,303 + 0.6
224,303 + 0.4
224,311 - 1.3
224,321 - 0.9
224,422 - 0.5
224,454 + -1.4
224,464 - -1.9
224,515 + 2.2
224,516 - 1.9
224,518 + 1.1
224,519 + -0.2
224,519 + 0.6
224,521 + -1.2
224,523 + 1.9
224,533 - 0.5
224,535 + -0.4
224,537 + -1.1
224,537 - 1.4
224,538 + 1.0
224,538 - -0.5
224,554 + 1.0
224,555 + 0.0
224,555 + -0.4
224,561 - 0.3
224,564 - 0.5
224,567 + 0.1
224,575 - 0.3
224,575 - 0.8
224,577 - 0.6
224,594 + -0.6
224,620 - 1.6
224,688 - -0.9
224,708 - -1.2
224,713 - 0.5
224,714 - 0.3
224,724 - 0.4
224,736 + 0.8
224,853 + -0.5
224,859 - 9784 mRNA_1416 0.10 -0.9
224,869 + 9784 mRNA_1416 0.11 -2.7
224,880 - 9784 mRNA_1416 0.12 -0.5
225,026 - 9784 mRNA_1416 0.28 -0.1
225,038 + 9784 mRNA_1416 0.30 -0.6
225,300 + 9784 mRNA_1416 0.59 -0.2
226,160 + 0.3
226,185 + -1.7
226,189 - -0.3
226,307 - 1.0