Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1411

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1410: 9778 - K02920 RP-L36e, RPL36 large subunit ribosomal protein L36e, at 203700 to 204648 9778 mRNA_1411: 9779 - Hypothetical Protein, at 205641 to 206403 9779 mRNA_1412: 9780 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 206910 to 211871 9780

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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204,723 + 0.4
204,733 + 0.1
204,859 - -1.5
204,982 - 1.7
205,004 - -1.7
205,177 - 0.8
205,287 - 1.8
205,433 - -0.6
205,575 + 0.2
205,576 - 1.7
205,578 - -1.5
205,584 + 0.1
205,599 - -0.7
205,720 - 9779 mRNA_1411 0.10 0.7
205,741 + 9779 mRNA_1411 0.13 -0.5
205,743 + 9779 mRNA_1411 0.13 0.6
205,911 - 9779 mRNA_1411 0.35 0.4
206,008 - 9779 mRNA_1411 0.48 0.7
206,220 + 9779 mRNA_1411 0.76 0.4
206,326 - 9779 mRNA_1411 0.90 -1.5
206,327 - 3.3
206,353 + 0.4
206,458 - 0.5
206,471 + -0.0
206,608 - -0.5
206,633 + 2.0
206,803 - 0.4
206,968 + -0.7
207,082 - 0.8