Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1404

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1403: 9771 - K08190 SLC16A14 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 14, at 187710 to 190029 9771 mRNA_1404: 9772 - KOG2504 Monocarboxylate transporter, at 190800 to 192983 9772 mRNA_1405: 9773 - Hypothetical Protein, at 193518 to 194541 9773

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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189,982 + -1.1
190,004 + 0.3
190,019 + -0.1
190,164 - -1.6
190,322 - 0.8
190,451 - -0.3
190,465 + -1.2
190,478 + 1.3
190,566 - -0.4
190,567 - -0.8
190,609 + 0.2
190,709 - -1.3
190,784 + 1.9
190,923 - -0.2
191,047 + 9772 mRNA_1404 0.11 1.7
192,226 + 9772 mRNA_1404 0.65 2.6
192,227 + 9772 mRNA_1404 0.65 0.3
192,228 - 9772 mRNA_1404 0.65 -0.3
192,228 - 9772 mRNA_1404 0.65 0.9
192,570 - 9772 mRNA_1404 0.81 -0.2
192,668 - 9772 mRNA_1404 0.86 1.6
192,670 + 9772 mRNA_1404 0.86 1.0
192,685 + 9772 mRNA_1404 0.86 -0.1
192,811 + 1.3
192,943 - -1.0
192,950 + 1.0
192,962 - 1.3
192,962 - -0.7
192,966 + -0.1
193,096 + -0.7
193,099 + -0.4
193,100 + 0.4
193,100 + -0.1
193,101 + -0.2
193,108 + 0.5
193,122 + 1.6
193,123 + 0.3
193,123 + -0.2
193,132 - 1.0
193,263 - 0.1
193,419 + -0.2
193,554 - 2.0