Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1400

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1399: 9767 - Hypothetical Protein, at 179296 to 180900 9767 mRNA_1400: 9768 - K20360 TBC1D22, GYP1 TBC1 domain family member 2, at 181487 to 184184 9768 mRNA_1401: 9769 - Hypothetical Protein, at 184306 to 185166 9769

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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180,539 + 9767 mRNA_1399 0.77 0.7
180,701 + 9767 mRNA_1399 0.88 -0.2
181,106 - 0.8
181,672 - -0.5
181,698 + -0.0
181,728 + -0.6
181,848 - 9768 mRNA_1400 0.13 -0.9
181,854 + 9768 mRNA_1400 0.14 1.9
181,957 + 9768 mRNA_1400 0.17 2.0
182,278 - 9768 mRNA_1400 0.29 0.3
182,315 + 9768 mRNA_1400 0.31 0.2
182,441 - 9768 mRNA_1400 0.35 1.4
182,613 + 9768 mRNA_1400 0.42 1.0
182,835 - 9768 mRNA_1400 0.50 -0.2
182,856 + 9768 mRNA_1400 0.51 3.3
184,261 + 1.5
184,270 - 0.2
184,320 - -0.1
184,333 + -0.7
184,445 + 9769 mRNA_1401 0.16 -0.4
184,453 + 9769 mRNA_1401 0.17 -0.9
184,459 - 9769 mRNA_1401 0.18 0.9
184,459 - 9769 mRNA_1401 0.18 -1.1