Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1389

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1389: 9757 - Hypothetical Protein, at 155335 to 156152 9757 mRNA_1390: 9758 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 156559 to 159898 9758

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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154,755 - -0.3
154,788 + -0.0
154,918 - 0.0
155,056 + 0.9
155,060 + 0.9
155,069 - -0.9
155,091 - -0.7
155,127 + 0.1
155,216 + -1.4
155,226 + 1.0
155,231 - 0.3
155,239 + 2.8
155,249 + -0.3
155,349 + 0.6
155,354 - -0.6
155,365 - 0.5
155,366 - 0.6
155,380 + -2.0
155,389 + -0.5
155,391 - 0.9
155,392 - 0.6
155,394 - 0.8
155,404 + 0.2
155,502 + 9757 mRNA_1389 0.20 1.0
155,503 - 9757 mRNA_1389 0.21 0.4
155,527 - 9757 mRNA_1389 0.23 0.3
155,533 - 9757 mRNA_1389 0.24 0.8
155,544 - 9757 mRNA_1389 0.26 -0.9
155,576 + 9757 mRNA_1389 0.29 0.7
155,663 + 9757 mRNA_1389 0.40 0.0
155,667 - 9757 mRNA_1389 0.41 -0.6
155,678 + 9757 mRNA_1389 0.42 0.8
155,679 - 9757 mRNA_1389 0.42 0.8
155,685 + 9757 mRNA_1389 0.43 1.0
155,687 - 9757 mRNA_1389 0.43 -0.3
155,690 - 9757 mRNA_1389 0.43 -0.9
155,696 - 9757 mRNA_1389 0.44 1.2
155,715 - 9757 mRNA_1389 0.46 1.9
155,749 + 9757 mRNA_1389 0.51 0.8
155,764 + 9757 mRNA_1389 0.52 0.1
155,816 + 9757 mRNA_1389 0.59 0.4
155,834 - 9757 mRNA_1389 0.61 0.6
155,853 + 9757 mRNA_1389 0.63 -1.1
155,859 - 9757 mRNA_1389 0.64 1.3
155,861 - 9757 mRNA_1389 0.64 -0.6
155,861 + 9757 mRNA_1389 0.64 1.1
155,861 - 9757 mRNA_1389 0.64 0.3
155,861 + 9757 mRNA_1389 0.64 0.5
155,866 - 9757 mRNA_1389 0.65 0.2
155,872 + 9757 mRNA_1389 0.66 0.5
155,876 + 9757 mRNA_1389 0.66 0.6
155,878 + 9757 mRNA_1389 0.66 1.0
155,887 + 9757 mRNA_1389 0.67 -0.3
155,998 - 9757 mRNA_1389 0.81 0.5
156,021 + 9757 mRNA_1389 0.84 2.0
156,156 + 0.5
156,157 - -1.2
156,173 + 1.3
156,723 - 1.1
156,876 - 0.0
156,887 + -0.9
156,905 + 9758 mRNA_1390 0.10 -0.5