Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1387

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1386: 9754 - K06966 K06966 uncharacterized protein, at 147599 to 148550 9754 mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148746 to 149519 9755 mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150149 to 154291 9756

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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148,066 + 9754 mRNA_1386 0.49 0.2
148,071 - 9754 mRNA_1386 0.50 0.9
148,205 + 9754 mRNA_1386 0.64 1.7
148,213 + 9754 mRNA_1386 0.64 0.4
148,517 - -0.3
148,551 + 0.0
148,799 + -0.6
148,816 + 1.1
148,820 - 1.3
148,831 + 9755 mRNA_1387 0.11 -0.8
148,841 - 9755 mRNA_1387 0.12 0.1
148,956 - 9755 mRNA_1387 0.27 0.7
149,117 - 9755 mRNA_1387 0.48 -0.2
149,131 - 9755 mRNA_1387 0.50 1.3
149,135 + 9755 mRNA_1387 0.50 0.3
149,137 - 9755 mRNA_1387 0.51 -0.8
149,138 + 9755 mRNA_1387 0.51 0.5
149,278 - 9755 mRNA_1387 0.69 -1.1
149,404 - 9755 mRNA_1387 0.85 0.4
149,417 + 9755 mRNA_1387 0.87 -0.6
149,719 + 0.5
149,727 - -1.5
149,739 - -0.6
149,990 + 1.2
150,006 + 0.0
150,097 - -0.5
150,279 + 0.3