Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1381

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1380: 9748 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 136828 to 138135 9748 mRNA_1381: 9749 - Hypothetical Protein, at 138308 to 139656 9749 mRNA_1382: 9750 - K11805 WDR68, HAN11 WD repeat-containing protein 68, at 139851 to 141572 9750

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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138,159 - 2.3
138,159 - 0.5
138,164 + 2.1
138,165 + -0.0
138,172 + -0.6
138,179 - -0.7
138,236 + -0.5
138,271 - 1.8
138,316 + 1.0
138,335 - 0.8
138,340 + 1.1
138,341 + -1.2
138,346 + 2.4
138,347 + 0.1
138,348 + -0.3
138,352 + 0.2
138,377 - -1.4
138,382 - -0.7
138,405 - -0.6
138,414 + 1.5
138,427 - 0.8
138,433 - 1.4
138,434 - 0.5
138,441 + 1.6
138,446 + 9749 mRNA_1381 0.10 1.9
138,480 - 9749 mRNA_1381 0.13 0.6
138,551 - 9749 mRNA_1381 0.18 -0.0
138,573 + 9749 mRNA_1381 0.20 1.4
138,605 - 9749 mRNA_1381 0.22 -0.5
138,658 - 9749 mRNA_1381 0.26 -0.1
138,663 + 9749 mRNA_1381 0.26 1.3
138,672 - 9749 mRNA_1381 0.27 0.3
138,690 + 9749 mRNA_1381 0.28 -0.4
138,712 - 9749 mRNA_1381 0.30 0.2
138,734 - 9749 mRNA_1381 0.32 -0.6
138,800 + 9749 mRNA_1381 0.36 -0.3
138,861 - 9749 mRNA_1381 0.41 -1.7
139,130 - 9749 mRNA_1381 0.61 -0.4
139,142 - 9749 mRNA_1381 0.62 -0.2
139,316 - 9749 mRNA_1381 0.75 -0.2
139,420 + 9749 mRNA_1381 0.82 1.1
139,712 + -0.5
139,836 + 0.2
139,858 - -0.5
139,862 + 0.6
139,865 + 0.3
139,868 - 2.3
139,870 + 0.9
140,033 - 9750 mRNA_1382 0.11 0.5
140,045 - 9750 mRNA_1382 0.11 0.0
140,050 + 9750 mRNA_1382 0.12 0.3
140,163 + 9750 mRNA_1382 0.18 0.9
140,169 - 9750 mRNA_1382 0.18 2.7
140,185 - 9750 mRNA_1382 0.19 0.5
140,194 + 9750 mRNA_1382 0.20 -0.4
140,295 - 9750 mRNA_1382 0.26 -1.0
140,598 - 9750 mRNA_1382 0.43 1.7
140,643 + 9750 mRNA_1382 0.46 1.3