Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1379

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746 mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134077 to 136225 9747 mRNA_1380: 9748 - K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit, at 136828 to 138135 9748

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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133,099 - 9746 mRNA_1378 0.76 -1.1
133,105 + 9746 mRNA_1378 0.76 0.3
133,317 + 9746 mRNA_1378 0.82 0.3
133,441 - 9746 mRNA_1378 0.85 -0.5
133,507 + 9746 mRNA_1378 0.87 1.9
133,625 - 1.4
133,696 - 1.4
134,093 - -0.5
134,259 + -0.5
134,368 - 9747 mRNA_1379 0.14 0.2
134,416 + 9747 mRNA_1379 0.16 2.0
134,476 + 9747 mRNA_1379 0.19 0.6
134,567 + 9747 mRNA_1379 0.23 -0.3
134,764 - 9747 mRNA_1379 0.32 1.0
134,768 - 9747 mRNA_1379 0.32 3.4
134,774 - 9747 mRNA_1379 0.32 0.1
134,879 - 9747 mRNA_1379 0.37 -1.4
134,946 + 9747 mRNA_1379 0.40 -0.4
134,947 - 9747 mRNA_1379 0.40 2.3
134,962 + 9747 mRNA_1379 0.41 -0.1
135,257 - 9747 mRNA_1379 0.55 -0.2
135,387 - 9747 mRNA_1379 0.61 -0.6
135,452 - 9747 mRNA_1379 0.64 0.3
135,690 - 9747 mRNA_1379 0.75 -0.3
136,159 + 1.8
136,261 - 1.5
136,268 + -0.2
136,269 - 0.1
136,282 + -0.5
136,292 - 0.1
136,435 - -0.6
136,436 - 0.0
136,570 + 1.5
136,570 - -0.5
136,583 + -2.8
136,599 + 0.1
136,729 + -0.2
136,730 - -0.7
136,756 + 0.7