Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1378

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1377: 9745 - Hypothetical Protein, at 129264 to 129958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746 mRNA_1379: 9747 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF11976,SUPERFAMILY--SSF54236, at 134077 to 136225 9747

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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129,394 + 9745 mRNA_1377 0.19 0.8
129,578 + 9745 mRNA_1377 0.45 1.8
129,667 - 9745 mRNA_1377 0.58 0.9
129,680 + 9745 mRNA_1377 0.60 -0.8
129,690 + 9745 mRNA_1377 0.61 -0.0
129,841 - 9745 mRNA_1377 0.83 0.5
129,858 - 9745 mRNA_1377 0.85 1.8
129,965 - -0.1
129,981 - -0.5
129,996 + -1.9
129,996 - 1.0
130,156 - -0.1
130,289 - 0.8
130,290 - -0.0
130,296 + 1.5
130,311 - -0.8
130,405 - 0.3
130,412 + -1.2
130,419 - -1.3
130,421 + -0.5
130,424 - -1.4
130,694 - 0.8
130,715 - -0.5
130,733 + 9746 mRNA_1378 0.10 0.5
130,982 + 9746 mRNA_1378 0.17 1.1
131,000 + 9746 mRNA_1378 0.18 0.4
131,173 - 9746 mRNA_1378 0.22 -0.9
131,278 - 9746 mRNA_1378 0.25 1.6
131,302 - 9746 mRNA_1378 0.26 -0.2
131,386 + 9746 mRNA_1378 0.28 -0.6
131,416 + 9746 mRNA_1378 0.29 2.8
131,476 + 9746 mRNA_1378 0.31 1.6
131,755 + 9746 mRNA_1378 0.39 1.4
131,856 + 9746 mRNA_1378 0.41 0.3
131,942 + 9746 mRNA_1378 0.44 0.5
132,476 - 9746 mRNA_1378 0.59 3.3
132,608 - 9746 mRNA_1378 0.62 0.1
132,612 + 9746 mRNA_1378 0.62 -0.3
132,629 + 9746 mRNA_1378 0.63 -0.9
132,634 - 9746 mRNA_1378 0.63 1.4
132,650 + 9746 mRNA_1378 0.63 0.8
132,782 - 9746 mRNA_1378 0.67 0.4
132,946 + 9746 mRNA_1378 0.72 0.0
133,060 + 9746 mRNA_1378 0.75 0.4
133,099 - 9746 mRNA_1378 0.76 -1.1
133,105 + 9746 mRNA_1378 0.76 0.3
133,317 + 9746 mRNA_1378 0.82 0.3
133,441 - 9746 mRNA_1378 0.85 -0.5
133,507 + 9746 mRNA_1378 0.87 1.9
133,625 - 1.4
133,696 - 1.4
134,093 - -0.5
134,259 + -0.5
134,368 - 9747 mRNA_1379 0.14 0.2
134,416 + 9747 mRNA_1379 0.16 2.0
134,476 + 9747 mRNA_1379 0.19 0.6
134,567 + 9747 mRNA_1379 0.23 -0.3
134,764 - 9747 mRNA_1379 0.32 1.0
134,768 - 9747 mRNA_1379 0.32 3.4
134,774 - 9747 mRNA_1379 0.32 0.1
134,879 - 9747 mRNA_1379 0.37 -1.4
134,946 + 9747 mRNA_1379 0.40 -0.4
134,947 - 9747 mRNA_1379 0.40 2.3
134,962 + 9747 mRNA_1379 0.41 -0.1