Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1377

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127099 to 128886 9744 mRNA_1377: 9745 - Hypothetical Protein, at 129264 to 129958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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128,354 + 9744 mRNA_1376 0.70 1.5
128,510 - 9744 mRNA_1376 0.79 -0.1
128,804 - -1.0
128,965 + 0.2
129,101 + 0.2
129,109 - -0.7
129,110 + 0.4
129,118 + -1.6
129,119 - 0.3
129,127 + -0.2
129,135 + 0.8
129,160 + 1.9
129,394 + 9745 mRNA_1377 0.19 0.8
129,578 + 9745 mRNA_1377 0.45 1.8
129,667 - 9745 mRNA_1377 0.58 0.9
129,680 + 9745 mRNA_1377 0.60 -0.8
129,690 + 9745 mRNA_1377 0.61 -0.0
129,841 - 9745 mRNA_1377 0.83 0.5
129,858 - 9745 mRNA_1377 0.85 1.8
129,965 - -0.1
129,981 - -0.5
129,996 + -1.9
129,996 - 1.0
130,156 - -0.1
130,289 - 0.8
130,290 - -0.0
130,296 + 1.5
130,311 - -0.8
130,405 - 0.3
130,412 + -1.2
130,419 - -1.3
130,421 + -0.5
130,424 - -1.4
130,694 - 0.8
130,715 - -0.5
130,733 + 9746 mRNA_1378 0.10 0.5