Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1373

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1372: 9740 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 115782 to 116339 9740 mRNA_1373: 9741 - K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6, at 116754 to 120065 9741

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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115,843 - 9740 mRNA_1372 0.11 -0.1
116,036 + 9740 mRNA_1372 0.46 1.1
116,187 + 9740 mRNA_1372 0.73 -0.9
116,267 + 9740 mRNA_1372 0.87 0.4
116,419 - 0.1
116,420 + -1.0
116,576 + 1.0
116,604 - 0.0
116,731 + 1.8
116,876 - -0.3
117,019 - -0.1
117,055 - 1.2
117,188 + 9741 mRNA_1373 0.13 -1.1
117,208 + 9741 mRNA_1373 0.14 2.0
117,684 + 9741 mRNA_1373 0.28 2.1
117,758 - 9741 mRNA_1373 0.30 1.8
117,798 - 9741 mRNA_1373 0.32 -0.9
117,814 + 9741 mRNA_1373 0.32 0.7
117,903 - 9741 mRNA_1373 0.35 0.4
117,923 - 9741 mRNA_1373 0.35 2.3
118,033 + 9741 mRNA_1373 0.39 0.5
118,486 - 9741 mRNA_1373 0.52 1.8
118,488 - 9741 mRNA_1373 0.52 -0.7
118,607 - 9741 mRNA_1373 0.56 -2.1
118,913 + 9741 mRNA_1373 0.65 0.4
118,933 + 9741 mRNA_1373 0.66 1.7
119,028 - 9741 mRNA_1373 0.69 1.2
119,048 - 9741 mRNA_1373 0.69 0.7
119,055 + 9741 mRNA_1373 0.69 -0.1
119,058 - 9741 mRNA_1373 0.70 -0.1
119,157 + 9741 mRNA_1373 0.73 0.6
119,201 + 9741 mRNA_1373 0.74 -1.0
119,326 + 9741 mRNA_1373 0.78 -0.8
119,509 - 9741 mRNA_1373 0.83 -0.2
119,520 + 9741 mRNA_1373 0.84 1.3
119,824 + 0.0
120,063 - -0.0
120,077 + 1.1
120,092 + -0.5
120,095 - 0.4
120,098 + -0.2
120,099 - 1.6
120,101 + 0.7
120,202 - 0.2
120,206 + 2.4
120,214 - 0.8
120,255 - 1.6
120,679 + 1.9
120,695 - 0.4
120,705 + -0.1
120,819 - -1.4
120,826 + 1.8
120,920 - 0.1
120,937 - 1.2
120,970 + 0.6
120,971 - -1.2
120,985 + 0.3
120,987 - 0.9
120,993 + 0.8
121,024 + 0.3