Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1353

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720 mRNA_1353: 9721 - HMMPfam-Starch binding domain-PF00686,ProSiteProfiles-CBM20 (carbohydrate binding type-20) domain profile.-PS51166,SMART-Starch binding domain-SM01065,SUPERFAMILY--SSF49452, at 67980 to 69503 9721 mRNA_1354: 9722 - Hypothetical Protein, at 69556 to 71202 9722

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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67,027 - 9720 mRNA_1352 0.88 1.0
67,035 + 9720 mRNA_1352 0.90 -1.2
67,052 - 2.3
67,314 - -2.1
67,363 - -0.2
67,365 - -1.2
67,372 + -0.7
67,498 - 0.3
67,510 - 2.6
67,514 + -0.3
67,597 + 2.4
67,644 - 0.1
67,645 + 0.2
67,714 + 0.5
67,758 + -0.1
67,775 + -0.1
67,780 + 1.0
67,785 - -0.8
67,787 - -1.5
67,794 - 1.9
67,799 - -0.3
67,799 - -0.7
67,800 + -0.4
67,804 + -0.9
67,814 - -0.7
67,814 - -0.1
67,817 - 1.4
67,822 + 1.4
67,834 - -0.4
67,898 - -1.4
67,943 + -0.2
67,946 + 0.4
67,964 + -0.6
67,989 + 0.0
67,999 - 1.9
68,303 + 9721 mRNA_1353 0.21 1.3
68,397 - 9721 mRNA_1353 0.27 -0.0
68,408 - 9721 mRNA_1353 0.28 -1.4
68,520 + 9721 mRNA_1353 0.35 2.1
68,589 + 9721 mRNA_1353 0.40 1.1
68,662 + 9721 mRNA_1353 0.45 -0.4
68,678 - 9721 mRNA_1353 0.46 1.0
68,841 - 9721 mRNA_1353 0.56 -0.1
68,922 + 9721 mRNA_1353 0.62 1.0
69,141 + 9721 mRNA_1353 0.76 1.3
69,287 - 9721 mRNA_1353 0.86 1.0
69,565 + 0.9
69,623 - 0.8
69,805 - 9722 mRNA_1354 0.15 0.1
69,830 - 9722 mRNA_1354 0.17 0.9
69,849 + 9722 mRNA_1354 0.18 0.6
69,905 - 9722 mRNA_1354 0.21 1.1
69,940 - 9722 mRNA_1354 0.23 -1.3
70,447 + 9722 mRNA_1354 0.54 0.5
70,452 - 9722 mRNA_1354 0.54 -0.8