Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1351

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60182 to 60785 9718 mRNA_1351: 9719 - Hypothetical Protein, at 61226 to 65910 9719 mRNA_1352: 9720 - Hypothetical Protein, at 66471 to 67100 9720

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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60,317 + 9718 mRNA_1350 0.22 2.3
60,319 + 9718 mRNA_1350 0.23 0.3
60,452 - 9718 mRNA_1350 0.45 0.8
60,892 + 0.1
61,038 - 0.2
61,050 + 1.3
61,054 + -0.8
61,150 + 0.0
61,209 + 0.5
61,304 + 0.4
61,334 - -0.2
61,404 - 0.8
61,458 - 0.6
61,480 - 0.1
61,493 + 0.4
61,772 - 9719 mRNA_1351 0.12 0.3
61,796 - 9719 mRNA_1351 0.12 1.2
61,943 + 9719 mRNA_1351 0.15 0.3
61,953 + 9719 mRNA_1351 0.16 0.4
61,989 - 9719 mRNA_1351 0.16 1.9
62,249 - 9719 mRNA_1351 0.22 -0.3
62,402 + 9719 mRNA_1351 0.25 2.0
62,499 - 9719 mRNA_1351 0.27 -1.8
62,630 + 9719 mRNA_1351 0.30 -1.7
62,710 + 9719 mRNA_1351 0.32 2.7
62,711 + 9719 mRNA_1351 0.32 1.2
62,721 - 9719 mRNA_1351 0.32 1.0
62,777 + 9719 mRNA_1351 0.33 2.5
62,826 + 9719 mRNA_1351 0.34 1.2
63,009 + 9719 mRNA_1351 0.38 1.1
63,874 + 9719 mRNA_1351 0.57 -1.5
64,009 - 9719 mRNA_1351 0.59 0.0
64,137 + 9719 mRNA_1351 0.62 0.1
64,157 + 9719 mRNA_1351 0.63 1.6
64,185 - 9719 mRNA_1351 0.63 -1.4
64,269 - 9719 mRNA_1351 0.65 -0.0
64,320 + 9719 mRNA_1351 0.66 0.1
64,385 + 9719 mRNA_1351 0.67 -0.2
64,443 + 9719 mRNA_1351 0.69 0.8
64,581 - 9719 mRNA_1351 0.72 -0.1
64,693 - 9719 mRNA_1351 0.74 1.1
64,761 - 9719 mRNA_1351 0.75 -0.0
64,869 - 9719 mRNA_1351 0.78 -0.3
64,905 - 9719 mRNA_1351 0.79 -0.1
64,956 - 9719 mRNA_1351 0.80 0.5
64,966 + 9719 mRNA_1351 0.80 0.5
65,138 - 9719 mRNA_1351 0.84 -1.1
65,360 + 9719 mRNA_1351 0.88 0.4
65,363 + 9719 mRNA_1351 0.88 2.0
65,468 - 0.3
65,471 + 0.6
65,500 + -0.7
65,540 - -0.5
65,575 - -0.5
65,600 + -0.8
65,606 + 1.4
65,720 - 0.4
65,839 + 1.4
65,953 - 1.1
66,035 + 2.1
66,064 + 0.1
66,505 - 1.2
66,526 - -0.2
66,532 + -0.5
66,532 + 2.7
66,532 + 1.0
66,644 - 9720 mRNA_1352 0.27 0.8
66,779 + 9720 mRNA_1352 0.49 -0.0
66,783 - 9720 mRNA_1352 0.50 -0.0
66,874 - 9720 mRNA_1352 0.64 -2.4