Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1345

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712 mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47713 to 50221 9713 mRNA_1346: 9714 - Hypothetical Protein, at 50487 to 51327 9714

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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47,611 + -0.0
47,616 - 1.5
47,746 - -1.7
47,747 - 1.0
47,751 + 1.1
47,754 - 1.0
47,763 - 1.8
47,764 + 0.3
47,855 + -0.7
47,901 - -0.0
47,907 - -2.6
48,006 - 9713 mRNA_1345 0.12 0.0
48,058 - 9713 mRNA_1345 0.14 3.7
48,095 + 9713 mRNA_1345 0.15 -1.7
48,185 + 9713 mRNA_1345 0.19 0.7
48,605 - 9713 mRNA_1345 0.36 0.6
48,606 - 9713 mRNA_1345 0.36 1.9
48,775 - 9713 mRNA_1345 0.42 1.6
48,906 - 9713 mRNA_1345 0.48 2.2
48,928 - 9713 mRNA_1345 0.48 -1.2
48,933 - 9713 mRNA_1345 0.49 0.2
48,936 - 9713 mRNA_1345 0.49 2.8
48,938 - 9713 mRNA_1345 0.49 -0.0
48,945 + 9713 mRNA_1345 0.49 -1.2
49,216 - 9713 mRNA_1345 0.60 1.2
49,391 + 9713 mRNA_1345 0.67 0.1
49,422 + 9713 mRNA_1345 0.68 -2.2
49,489 + 9713 mRNA_1345 0.71 -0.7
49,497 - 9713 mRNA_1345 0.71 0.2
49,516 + 9713 mRNA_1345 0.72 -1.5
49,602 - 9713 mRNA_1345 0.75 0.6
49,648 - 9713 mRNA_1345 0.77 2.1
49,818 - 9713 mRNA_1345 0.84 0.6
49,820 + 9713 mRNA_1345 0.84 -0.7
49,921 - 9713 mRNA_1345 0.88 -0.6
49,962 - 9713 mRNA_1345 0.90 0.9
50,203 + -0.0
50,239 + 0.7
50,432 + -0.4
50,481 + -1.4
50,484 - 0.2
50,517 + -1.7
50,688 + 9714 mRNA_1346 0.24 -0.3
50,711 + 9714 mRNA_1346 0.27 0.6
50,725 + 9714 mRNA_1346 0.28 0.6
50,821 - 9714 mRNA_1346 0.40 -0.2
50,856 + 9714 mRNA_1346 0.44 -1.2
51,021 - 9714 mRNA_1346 0.63 1.0
51,118 + 9714 mRNA_1346 0.75 -0.8