Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1343

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1342: 9710 - SUPERFAMILY--SSF52047, at 39256 to 40650 9710 mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40770 to 45014 9711 mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45254 to 47593 9712

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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39,799 + 9710 mRNA_1342 0.39 1.9
40,048 - 9710 mRNA_1342 0.57 -1.6
40,083 - 9710 mRNA_1342 0.59 0.9
40,409 - 9710 mRNA_1342 0.83 0.1
40,633 + 0.8
40,800 + 0.8
40,967 - 0.0
40,968 + -1.5
41,017 + -0.1
41,320 - 9711 mRNA_1343 0.13 2.0
41,595 - 9711 mRNA_1343 0.19 0.6
42,056 - 9711 mRNA_1343 0.30 0.9
42,125 - 9711 mRNA_1343 0.32 -1.4
42,200 - 9711 mRNA_1343 0.34 -0.3
42,356 + 9711 mRNA_1343 0.37 0.5
42,507 - 9711 mRNA_1343 0.41 0.6
42,583 - 9711 mRNA_1343 0.43 0.7
42,642 - 9711 mRNA_1343 0.44 1.1
42,713 + 9711 mRNA_1343 0.46 1.0
42,784 - 9711 mRNA_1343 0.47 0.6
42,825 - 9711 mRNA_1343 0.48 1.0
42,835 + 9711 mRNA_1343 0.49 1.2
42,959 - 9711 mRNA_1343 0.52 2.9
42,993 + 9711 mRNA_1343 0.52 -0.5
43,046 + 9711 mRNA_1343 0.54 -0.5
43,215 - 9711 mRNA_1343 0.58 0.4
43,229 + 9711 mRNA_1343 0.58 -1.5
43,279 + 9711 mRNA_1343 0.59 1.1
43,280 + 9711 mRNA_1343 0.59 -1.9
43,331 + 9711 mRNA_1343 0.60 2.2
43,361 - 9711 mRNA_1343 0.61 -1.0
43,374 - 9711 mRNA_1343 0.61 0.0
43,425 - 9711 mRNA_1343 0.63 0.2
43,429 + 9711 mRNA_1343 0.63 -1.0
43,431 - 9711 mRNA_1343 0.63 -0.4
43,532 - 9711 mRNA_1343 0.65 1.1
43,546 - 9711 mRNA_1343 0.65 1.1
43,552 + 9711 mRNA_1343 0.66 2.4
43,552 + 9711 mRNA_1343 0.66 0.8
43,552 + 9711 mRNA_1343 0.66 0.1
43,552 + 9711 mRNA_1343 0.66 2.1
43,663 - 9711 mRNA_1343 0.68 -0.5
43,681 - 9711 mRNA_1343 0.69 0.3
43,821 - 9711 mRNA_1343 0.72 0.1
44,114 + 9711 mRNA_1343 0.79 1.5
44,281 - 9711 mRNA_1343 0.83 1.5
44,510 + 9711 mRNA_1343 0.88 1.5
44,890 + -1.0
44,991 + -1.7
45,108 + 1.3
45,131 + -1.4
45,186 - -0.8
45,188 - 1.4
45,189 + 0.3
45,189 + 1.5