Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1342

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1341: 9709 - SUPERFAMILY--SSF52047, at 37179 to 38782 9709 mRNA_1342: 9710 - SUPERFAMILY--SSF52047, at 39256 to 40650 9710 mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40770 to 45014 9711

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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38,287 + 9709 mRNA_1341 0.69 1.5
38,300 + 9709 mRNA_1341 0.70 -1.0
38,300 + 9709 mRNA_1341 0.70 0.0
38,434 - 9709 mRNA_1341 0.78 2.4
38,473 + 9709 mRNA_1341 0.81 0.0
38,566 - 9709 mRNA_1341 0.86 -1.3
38,839 + 0.1
38,881 + 1.9
39,018 - 2.2
39,021 - 0.9
39,175 + -0.6
39,272 - 1.3
39,321 - 0.4
39,374 + -1.2
39,405 + 9710 mRNA_1342 0.11 1.1
39,494 + 9710 mRNA_1342 0.17 0.5
39,799 + 9710 mRNA_1342 0.39 1.9
40,048 - 9710 mRNA_1342 0.57 -1.6
40,083 - 9710 mRNA_1342 0.59 0.9
40,409 - 9710 mRNA_1342 0.83 0.1
40,633 + 0.8
40,800 + 0.8
40,967 - 0.0
40,968 + -1.5
41,017 + -0.1
41,320 - 9711 mRNA_1343 0.13 2.0
41,595 - 9711 mRNA_1343 0.19 0.6