Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1327

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1326: 9694 - KOG1239 Inner membrane protein translocase involved in respiratory chain assembly, at 227 to 1696 9694 mRNA_1327: 9695 - K14684 SLC25A23S solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41, at 2473 to 5541 9695 mRNA_1328: 9696 - SUPERFAMILY--SSF82708, at 5867 to 7721 9696

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,888 - 0.4
1,889 - 0.5
2,000 + 1.2
2,009 + 1.2
2,141 - 2.2
2,152 - 2.6
2,166 + -1.1
2,167 + 1.1
2,173 + -3.6
2,180 - 0.3
2,180 + -0.5
2,189 + 0.2
2,189 + 3.9
2,197 + 0.6
2,246 + -1.3
2,333 - 2.5
2,471 + 2.2
2,490 + -0.1
2,751 + 1.9
2,779 - -0.5
3,057 + 9695 mRNA_1327 0.19 -0.1
3,065 + 9695 mRNA_1327 0.19 0.2
3,139 - 9695 mRNA_1327 0.22 -0.0
3,139 - 9695 mRNA_1327 0.22 -0.3
3,354 - 9695 mRNA_1327 0.29 0.4
3,360 + 9695 mRNA_1327 0.29 0.5
3,360 + 9695 mRNA_1327 0.29 -0.5
3,445 - 9695 mRNA_1327 0.32 1.2
3,475 - 9695 mRNA_1327 0.33 1.1
3,516 - 9695 mRNA_1327 0.34 -0.9
3,608 - 9695 mRNA_1327 0.37 0.7
3,614 + 9695 mRNA_1327 0.37 0.2
3,714 - 9695 mRNA_1327 0.40 0.3
3,728 + 9695 mRNA_1327 0.41 0.4
3,758 + 9695 mRNA_1327 0.42 0.5
3,761 - 9695 mRNA_1327 0.42 0.8
3,771 - 9695 mRNA_1327 0.42 0.5
3,792 - 9695 mRNA_1327 0.43 0.5
3,798 + 9695 mRNA_1327 0.43 -0.1
3,799 + 9695 mRNA_1327 0.43 0.5
3,921 - 9695 mRNA_1327 0.47 2.2
3,997 + 9695 mRNA_1327 0.50 -0.6
3,998 - 9695 mRNA_1327 0.50 0.7
3,998 - 9695 mRNA_1327 0.50 2.0
4,008 - 9695 mRNA_1327 0.50 2.3
4,193 - 9695 mRNA_1327 0.56 0.7
4,209 - 9695 mRNA_1327 0.57 0.2
4,346 + 9695 mRNA_1327 0.61 0.3
4,346 + 9695 mRNA_1327 0.61 0.6
4,487 - 9695 mRNA_1327 0.66 0.4
4,498 - 9695 mRNA_1327 0.66 1.9
4,512 - 9695 mRNA_1327 0.66 1.3
4,598 + 9695 mRNA_1327 0.69 0.2
4,763 - 9695 mRNA_1327 0.75 1.0
4,938 + 9695 mRNA_1327 0.80 1.8
5,367 - 1.8
5,399 - 0.6
5,655 - -0.7
5,846 + -0.4
5,952 - 0.4
6,136 + 9696 mRNA_1328 0.15 0.1
6,296 - 9696 mRNA_1328 0.23 0.0
6,297 + 9696 mRNA_1328 0.23 0.0
6,319 + 9696 mRNA_1328 0.24 3.0
6,399 - 9696 mRNA_1328 0.29 -0.5
6,430 - 9696 mRNA_1328 0.30 -0.9
6,442 + 9696 mRNA_1328 0.31 1.4
6,445 - 9696 mRNA_1328 0.31 1.3